PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn180221
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 469aa    MW: 52791.9 Da    PI: 5.0164
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn180221genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.4e-35141042101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d++++e++sws+++nsfvv+++ efa+ +Lp yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F k++k+ll++i+
    Achn180221  14 FLLKTYEMVDDSSTDEIVSWSSSKNSFVVWNPPEFARILLPAYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFVKDQKHLLKNIH 101
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    Achn180221 102 RRK 104
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.3E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.1E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEGSPAGGGG PAPFLLKTYE MVDDSSTDEI VSWSSSKNSF VVWNPPEFAR ILLPAYFKHN  60
NFSSFIRQLN TYGFRKIDPE RWEFANEEFV KDQKHLLKNI HRRKPIHSHS QPQGSAADPE  120
RAAFEEEIDK LSREKTTLEN NLLRFKQQSA AKPQLEDWTQ RVTAIELRQE SLLSFLEKVV  180
QNQNFVEQLS RKLESMDFSA YNKKRRLSQV DYSQQVPENS FVDNQWSSRP DFGNIFPQDF  240
SNKLRLELSP SVSDINFVSH STQSSNENGG SPQRRLSEGY PKDAQRAGGL SFASETLELS  300
DTGTSFTFNM DSALSHKAGG SENPRLLPLQ QNLTSNEEVD GHLSCHLNLT LASSSLQVDK  360
SQYSAKVPQQ SHEIGISPEL RSNANDKEDD DGTLSSSQEA PVKNQGPATS QIRVNDVFWE  420
QFLTERPGIS DAEEASSSFR ENTYDDQEDR QSGRAVSRNG KNTEHLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D7e-23510315129Heat shock factor protein 1
5d5v_B7e-23510315129Heat shock factor protein 1
5d5u_B7e-23510315129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868967.10.0PREDICTED: heat stress transcription factor A-5-like
RefseqXP_015870139.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ51e-163HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLB9S9Y40.0B9S9Y4_RICCO; DNA binding protein, putative
STRINGPOPTR_0001s32810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94612125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-165HSF family protein